IL_5T2C_275

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5T2C|1|AA|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_275 not in the Motif Atlas

Homologous match to IL_8CRE_413

Geometric discrepancy: 0.4415

The information below is about IL_8CRE_413

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5T2C|1|AA|U|487
5T2C|1|AA|U|488
5T2C|1|AA|A|489
*
5T2C|1|AA|U|511
5T2C|1|AA|A|512

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform