IL_5T2C_276

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGUUAAAA*UCCG

Length

13 nucleotides

Bulged bases

5T2C|1|AA|U|666, 5T2C|1|AA|U|667, 5T2C|1|AA|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|663
5T2C|1|AA|A|664
5T2C|1|AA|G|665
5T2C|1|AA|U|666
5T2C|1|AA|U|667
5T2C|1|AA|A|668
5T2C|1|AA|A|669
5T2C|1|AA|A|670
5T2C|1|AA|A|671
*
5T2C|1|AA|U|1161
5T2C|1|AA|C|1162
5T2C|1|AA|C|1163
5T2C|1|AA|G|1164

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AE

40S ribosomal protein S26

Chain AJ

40S ribosomal protein S2