IL_5T2C_281

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGCGG*CCGGGCAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|1098
5T2C|1|AA|G|1099
5T2C|1|AA|A|1100
5T2C|1|AA|U|1101
5T2C|1|AA|G|1102
5T2C|1|AA|C|1103
5T2C|1|AA|G|1104
5T2C|1|AA|G|1105
*
5T2C|1|AA|C|1127
5T2C|1|AA|C|1128
5T2C|1|AA|G|1129
5T2C|1|AA|G|1130
5T2C|1|AA|G|1131
5T2C|1|AA|C|1132
5T2C|1|AA|A|1133
5T2C|1|AA|G|1134

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S26

Chain AN

40S ribosomal protein S13

Chain AV

40S ribosomal protein S27

Chain Ao

40S ribosomal protein SA

Chain Ap

40S ribosomal protein S3a

Chain Az

40S ribosomal protein S17