IL_5T2C_283
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5T2C|1|AA|C|1215, 5T2C|1|AA|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_283 not in the Motif Atlas
- Homologous match to IL_8CRE_445
- Geometric discrepancy: 0.2634
- The information below is about IL_8CRE_445
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
5T2C|1|AA|A|1214
5T2C|1|AA|C|1215
5T2C|1|AA|C|1216
5T2C|1|AA|A|1217
*
5T2C|1|AA|U|1681
5T2C|1|AA|C|1682
5T2C|1|AA|C|1683
5T2C|1|AA|C|1684
5T2C|1|AA|U|1685
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein S28
- Chain An
- Transfer RNA; tRNA
- Chain As
- 40S ribosomal protein S5
- Chain Ay
- 40S ribosomal protein S16
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