IL_5T2C_284
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGCUUAAUUUGACUCAACACGGGAAACCUCAC*GGCUGCAC
- Length
- 40 nucleotides
- Bulged bases
- 5T2C|1|AA|C|1247, 5T2C|1|AA|A|1253, 5T2C|1|AA|G|1256, 5T2C|1|AA|A|1258, 5T2C|1|AA|A|1259, 5T2C|1|AA|C|1518, 5T2C|1|AA|U|1519, 5T2C|1|AA|A|1522
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|AA|G|1235
5T2C|1|AA|G|1236
5T2C|1|AA|C|1237
5T2C|1|AA|U|1238
5T2C|1|AA|U|1239
5T2C|1|AA|A|1240
5T2C|1|AA|A|1241
5T2C|1|AA|U|1242
5T2C|1|AA|U|1243
5T2C|1|AA|U|1244
5T2C|1|AA|G|1245
5T2C|1|AA|A|1246
5T2C|1|AA|C|1247
5T2C|1|AA|U|1248
5T2C|1|AA|C|1249
5T2C|1|AA|A|1250
5T2C|1|AA|A|1251
5T2C|1|AA|C|1252
5T2C|1|AA|A|1253
5T2C|1|AA|C|1254
5T2C|1|AA|G|1255
5T2C|1|AA|G|1256
5T2C|1|AA|G|1257
5T2C|1|AA|A|1258
5T2C|1|AA|A|1259
5T2C|1|AA|A|1260
5T2C|1|AA|C|1261
5T2C|1|AA|C|1262
5T2C|1|AA|U|1263
5T2C|1|AA|C|1264
5T2C|1|AA|A|1265
5T2C|1|AA|C|1266
*
5T2C|1|AA|G|1516
5T2C|1|AA|G|1517
5T2C|1|AA|C|1518
5T2C|1|AA|U|1519
5T2C|1|AA|G|1520
5T2C|1|AA|C|1521
5T2C|1|AA|A|1522
5T2C|1|AA|C|1523
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S18
- Chain AB
- 40S ribosomal protein S20
- Chain AG
- 40S ribosomal protein S29
- Chain AH
- Ubiquitin-40S ribosomal protein S27a
- Chain Ax
- 40S ribosomal protein S15
- Chain Ay
- 40S ribosomal protein S16
Coloring options: