IL_5T2C_286
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5T2C|1|AA|U|1494, 5T2C|1|AA|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_286 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.2992
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
5T2C|1|AA|U|1333
5T2C|1|AA|G|1334
5T2C|1|AA|G|1335
*
5T2C|1|AA|U|1492
5T2C|1|AA|C|1493
5T2C|1|AA|U|1494
5T2C|1|AA|G|1495
5T2C|1|AA|U|1496
5T2C|1|AA|G|1497
5T2C|1|AA|A|1498
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S20
- Chain AG
- 40S ribosomal protein S29
- Chain AH
- Ubiquitin-40S ribosomal protein S27a
- Chain Aq
- 40S ribosomal protein S3
- Chain Av
- 40S ribosomal protein S10
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