IL_5T2C_288

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGGCCCU*ACGGUCGAA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|U|1733
5T2C|1|AA|G|1734
5T2C|1|AA|A|1735
5T2C|1|AA|G|1736
5T2C|1|AA|G|1737
5T2C|1|AA|C|1738
5T2C|1|AA|C|1739
5T2C|1|AA|C|1740
5T2C|1|AA|U|1741
*
5T2C|1|AA|A|1793
5T2C|1|AA|C|1794
5T2C|1|AA|G|1795
5T2C|1|AA|G|1796
5T2C|1|AA|U|1797
5T2C|1|AA|C|1798
5T2C|1|AA|G|1799
5T2C|1|AA|A|1800
5T2C|1|AA|A|1801

Current chains

Chain AA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AK

40S ribosomal protein S6

Chain Au

40S ribosomal protein S8

Chain Q

60S ribosomal protein L24