IL_5T3K_004
3D structure
- PDB id
- 5T3K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fluorescence detection of RNA-ligand binding and crystal structure determination of ribosomal decoding site RNA using a heavy atom containing fluorescent ribonucleoside
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.14 Å
Loop
- Sequence
- GUC*G(75B)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 75B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T3K_004 not in the Motif Atlas
- Geometric match to IL_4P3T_006
- Geometric discrepancy: 0.0718
- The information below is about IL_4P3T_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
5T3K|1|C|G|10
5T3K|1|C|U|11
5T3K|1|C|C|12
*
5T3K|1|D|G|24
5T3K|1|D|75B|25
5T3K|1|D|C|26
Current chains
- Chain C
- RNA (5'-R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*GP*G)-3')
- Chain D
- RNA (5'-R(*CP*AP*GP*CP*GP*(75B)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*GP*G)-3')
- Chain B
- RNA (5'-R(*CP*AP*GP*CP*GP*(75B)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3')
Coloring options: