IL_5T5H_106
3D structure
- PDB id
- 5T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GUUAGUAC*GGAACCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T5H_106 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2039
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5T5H|1|D|G|71
5T5H|1|D|U|72
5T5H|1|D|U|73
5T5H|1|D|A|74
5T5H|1|D|G|75
5T5H|1|D|U|76
5T5H|1|D|A|77
5T5H|1|D|C|78
*
5T5H|1|D|G|98
5T5H|1|D|G|99
5T5H|1|D|A|100
5T5H|1|D|A|101
5T5H|1|D|C|102
5T5H|1|D|C|103
5T5H|1|D|C|104
Current chains
- Chain D
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 60S ribosomal protein L18a
- Chain U
- Ribosomal protein L21E (60S)
- Chain u
- 60S ribosomal protein L5
- Chain w
- 60S ribosomal protein L7
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