IL_5T62_037

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5T62|1|A|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_037 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.47

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5T62|1|A|C|977
5T62|1|A|G|978
5T62|1|A|U|979
5T62|1|A|A|980
5T62|1|A|U|981
*
5T62|1|A|A|1102
5T62|1|A|A|1103
5T62|1|A|G|1104

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L7-A

Chain d

60S ribosomal protein L18-A

Chain o

60S ribosomal protein L29