IL_5T62_090

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5T62|1|A|A|2281, 5T62|1|A|C|2287, 5T62|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_090 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0805

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5T62|1|A|C|2277
5T62|1|A|C|2278
5T62|1|A|A|2279
5T62|1|A|A|2280
5T62|1|A|A|2281
5T62|1|A|U|2282
5T62|1|A|G|2283
5T62|1|A|C|2284
5T62|1|A|C|2285
5T62|1|A|U|2286
5T62|1|A|C|2287
5T62|1|A|G|2288
*
5T62|1|A|C|2304
5T62|1|A|G|2305
5T62|1|A|C|2306
5T62|1|A|G|2307

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1