IL_5T62_104
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCU*GAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_104 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.1034
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5T62|1|A|G|2823
5T62|1|A|G|2824
5T62|1|A|C|2825
5T62|1|A|U|2826
*
5T62|1|A|G|2863
5T62|1|A|A|2864
5T62|1|A|U|2865
5T62|1|A|U|2866
5T62|1|A|C|2867
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L10
- Chain V
- 60S ribosomal export protein NMD3
- Chain o
- 60S ribosomal protein L29
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