IL_5T62_119

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

5T62|1|A|U|3056, 5T62|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_119 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0815

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5T62|1|A|U|3054
5T62|1|A|U|3055
5T62|1|A|U|3056
5T62|1|A|U|3057
5T62|1|A|U|3058
5T62|1|A|G|3059
*
5T62|1|A|C|3084
5T62|1|A|G|3085
5T62|1|A|A|3086
5T62|1|A|A|3087
5T62|1|A|G|3088

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain j

60S ribosomal protein L24-A

Chain q

60S ribosomal protein L31-A