IL_5T62_125
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5T62|1|A|A|3180, 5T62|1|A|A|3186, 5T62|1|A|U|3207, 5T62|1|A|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_125 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.0847
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|U|3179
5T62|1|A|A|3180
5T62|1|A|C|3181
5T62|1|A|G|3182
5T62|1|A|A|3183
5T62|1|A|A|3184
5T62|1|A|U|3185
5T62|1|A|A|3186
5T62|1|A|A|3187
5T62|1|A|G|3188
*
5T62|1|A|C|3204
5T62|1|A|G|3205
5T62|1|A|C|3206
5T62|1|A|U|3207
5T62|1|A|G|3208
5T62|1|A|A|3209
5T62|1|A|A|3210
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L6-A
- Chain K
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L14-A
- Chain b
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L20-A
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