IL_5T62_136

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_136 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.2275

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5T62|1|A|A|3342
5T62|1|A|G|3343
5T62|1|A|A|3344
5T62|1|A|G|3345
*
5T62|1|A|C|3360
5T62|1|A|G|3361
5T62|1|A|A|3362
5T62|1|A|U|3363

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain h

60S ribosomal protein L22-A