IL_5T62_137

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

5T62|1|A|U|3354, 5T62|1|A|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_137 not in the Motif Atlas

Homologous match to IL_5TBW_136

Geometric discrepancy: 0.1825

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5T62|1|A|C|3349
5T62|1|A|C|3350
*
5T62|1|A|G|3353
5T62|1|A|U|3354
5T62|1|A|U|3355
5T62|1|A|G|3356

Current chains

Chain A

25S Ribosomal RNA

Nearby chains