IL_5T6R_052
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 5T6R|1|A|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_052 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2422
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5T6R|1|A|U|1218
5T6R|1|A|C|1219
5T6R|1|A|U|1220
5T6R|1|A|A|1221
5T6R|1|A|G|1222
5T6R|1|A|A|1223
5T6R|1|A|C|1224
5T6R|1|A|A|1225
5T6R|1|A|G|1226
*
5T6R|1|A|C|1283
5T6R|1|A|C|1284
5T6R|1|A|G|1285
5T6R|1|A|A|1286
5T6R|1|A|A|1287
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain K
- 60S ribosomal protein L9-A
- Chain f
- 60S ribosomal protein L20-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
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