IL_5T6R_062

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

5T6R|1|A|U|1820, 5T6R|1|A|U|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_062 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.213

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5T6R|1|A|G|1623
5T6R|1|A|G|1624
*
5T6R|1|A|U|1819
5T6R|1|A|U|1820
5T6R|1|A|U|1821
5T6R|1|A|C|1822

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain t

60S ribosomal protein L34-A