IL_5T6R_082
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UG*UAAA
- Length
- 6 nucleotides
- Bulged bases
- 5T6R|1|A|A|2242, 5T6R|1|A|A|2243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_082 not in the Motif Atlas
- Homologous match to IL_8C3A_090
- Geometric discrepancy: 0.0604
- The information below is about IL_8C3A_090
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5T6R|1|A|U|2200
5T6R|1|A|G|2201
*
5T6R|1|A|U|2241
5T6R|1|A|A|2242
5T6R|1|A|A|2243
5T6R|1|A|A|2244
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain V
- Maltose binding protein, 60S ribosomal export protein Nmd3 fusion
Coloring options: