IL_5T6R_085
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_085 not in the Motif Atlas
- Homologous match to IL_5TBW_088
- Geometric discrepancy: 0.1114
- The information below is about IL_5TBW_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T6R|1|A|U|2211
5T6R|1|A|C|2212
5T6R|1|A|A|2213
5T6R|1|A|A|2214
5T6R|1|A|A|2215
5T6R|1|A|G|2216
5T6R|1|A|U|2217
*
5T6R|1|A|A|2228
5T6R|1|A|A|2229
5T6R|1|A|C|2230
5T6R|1|A|C|2231
5T6R|1|A|A|2232
5T6R|1|A|A|2233
5T6R|1|A|G|2234
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L42-A
- Chain S
- Ribosomal Protein uL1
- Chain V
- Maltose binding protein, 60S ribosomal export protein Nmd3 fusion
- Chain v
- 60S ribosomal protein L36-A
Coloring options: