IL_5T6R_104
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 5T6R|1|A|U|2860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_104 not in the Motif Atlas
- Geometric match to IL_5TBW_105
- Geometric discrepancy: 0.115
- The information below is about IL_5TBW_105
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5T6R|1|A|G|2828
5T6R|1|A|U|2829
5T6R|1|A|G|2830
*
5T6R|1|A|U|2858
5T6R|1|A|U|2859
5T6R|1|A|U|2860
5T6R|1|A|U|2861
5T6R|1|A|U|2862
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L10
- Chain V
- Maltose binding protein, 60S ribosomal export protein Nmd3 fusion
Coloring options: