IL_5T6R_107

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5T6R|1|A|G|2945, 5T6R|1|A|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_107 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.095

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5T6R|1|A|C|2879
5T6R|1|A|U|2880
5T6R|1|A|C|2881
*
5T6R|1|A|G|2943
5T6R|1|A|U|2944
5T6R|1|A|G|2945
5T6R|1|A|A|2946
5T6R|1|A|G|2947

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain i

60S ribosomal protein L23-A