IL_5T6R_132

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

5T6R|1|A|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_132 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0704

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

5T6R|1|A|U|3332
5T6R|1|A|G|3333
5T6R|1|A|U|3334
5T6R|1|A|A|3335
5T6R|1|A|A|3336
5T6R|1|A|G|3337
*
5T6R|1|A|C|3367
5T6R|1|A|U|3368
5T6R|1|A|G|3369
5T6R|1|A|A|3370
5T6R|1|A|G|3371

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain j

60S ribosomal protein L24-A