3D structure

PDB id
5T6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
AGUG*CAU
Length
7 nucleotides
Bulged bases
5T6R|1|B|U|86
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5T6R_141 not in the Motif Atlas
Homologous match to IL_5TBW_378
Geometric discrepancy: 0.0913
The information below is about IL_5TBW_378
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

5T6R|1|B|A|84
5T6R|1|B|G|85
5T6R|1|B|U|86
5T6R|1|B|G|87
*
5T6R|1|B|C|94
5T6R|1|B|A|95
5T6R|1|B|U|96

Current chains

Chain B
5S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain I
60S ribosomal protein L7-A
Chain L
60S ribosomal protein L10
Chain f
60S ribosomal protein L20-A

Coloring options:


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