IL_5T6R_152

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_152 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0869

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5T6R|1|A|G|1898
5T6R|1|A|G|1899
5T6R|1|A|A|1900
5T6R|1|A|A|1901
5T6R|1|A|G|1902
5T6R|1|A|U|1903
5T6R|1|A|C|1904
5T6R|1|A|G|1905
5T6R|1|A|G|1906
*
5T6R|1|A|C|2333
5T6R|1|A|U|2334
5T6R|1|A|G|2335
5T6R|1|A|U|2336
5T6R|1|A|C|2337

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain i

60S ribosomal protein L23-A