IL_5T7V_013

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5T7V|1|A|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_013 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1239

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5T7V|1|A|C|577
5T7V|1|A|G|578
5T7V|1|A|U|579
5T7V|1|A|A|580
5T7V|1|A|A|581
5T7V|1|A|A|582
5T7V|1|A|G|583
*
5T7V|1|A|C|889
5T7V|1|A|G|890

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S3

30S ribosomal protein S12

Chain S8

30S ribosomal protein S17