IL_5T7V_025
3D structure
- PDB id
- 5T7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T7V_025 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.1256
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5T7V|1|A|G|896
5T7V|1|A|G|897
5T7V|1|A|A|898
5T7V|1|A|G|899
5T7V|1|A|U|900
5T7V|1|A|A|901
5T7V|1|A|C|902
5T7V|1|A|G|903
*
5T7V|1|A|U|914
5T7V|1|A|G|915
5T7V|1|A|A|916
5T7V|1|A|A|917
5T7V|1|A|A|918
5T7V|1|A|C|919
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain S3
- 30S ribosomal protein S12
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