IL_5T7V_034

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUCAC*GAAGUCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_034 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.3324

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5T7V|1|A|C|1414
5T7V|1|A|G|1415
5T7V|1|A|U|1416
5T7V|1|A|C|1417
5T7V|1|A|A|1418
5T7V|1|A|C|1419
*
5T7V|1|A|G|1502
5T7V|1|A|A|1503
5T7V|1|A|A|1504
5T7V|1|A|G|1505
5T7V|1|A|U|1506
5T7V|1|A|C|1507
5T7V|1|A|G|1508

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain S3

30S ribosomal protein S12