IL_5T7V_042

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_042 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.1537

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|G|24
5T7V|1|B|U|25
5T7V|1|B|G|26
5T7V|1|B|G|27
5T7V|1|B|A|28
5T7V|1|B|U|29
5T7V|1|B|G|30
*
5T7V|1|B|C|555
5T7V|1|B|U|556
5T7V|1|B|G|557
5T7V|1|B|A|558
5T7V|1|B|A|559
5T7V|1|B|A|560
5T7V|1|B|C|561

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L5

50S ribosomal protein L22

Chain LE

50S ribosomal protein L32