IL_5T7V_046

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGA*UCAG

Length

7 nucleotides

Bulged bases

5T7V|1|B|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_046 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3674

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5T7V|1|B|C|152
5T7V|1|B|G|153
5T7V|1|B|A|154
*
5T7V|1|B|U|174
5T7V|1|B|C|175
5T7V|1|B|A|176
5T7V|1|B|G|177

Current chains

Chain B

23S ribosomal RNA

Nearby chains