IL_5T7V_054

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_054 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1311

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5T7V|1|B|U|649
5T7V|1|B|U|650
5T7V|1|B|A|651
5T7V|1|B|A|652
5T7V|1|B|G|653
*
5T7V|1|B|U|663
5T7V|1|B|G|664
5T7V|1|B|G|665
5T7V|1|B|A|666
5T7V|1|B|G|667

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15