IL_5T7V_079

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5T7V|1|B|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_079 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1574

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5T7V|1|B|C|1246
5T7V|1|B|G|1247
5T7V|1|B|U|1248
5T7V|1|B|U|1249
5T7V|1|B|G|1250
5T7V|1|B|A|1251
5T7V|1|B|A|1252
5T7V|1|B|G|1253
*
5T7V|1|B|U|1272
5T7V|1|B|G|1273
5T7V|1|B|G|1274
5T7V|1|B|A|1275
5T7V|1|B|G|1276

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L20