IL_5T7V_104

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5T7V|1|B|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_104 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2641

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

5T7V|1|B|U|1868
5T7V|1|B|G|1869
*
5T7V|1|B|U|1925
5T7V|1|B|A|1926
5T7V|1|B|A|1927
5T7V|1|B|A|1928

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L2