IL_5T7V_117

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

5T7V|1|B|G|2230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_117 not in the Motif Atlas

Geometric match to IL_3NDB_004

Geometric discrepancy: 0.2571

The information below is about IL_3NDB_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5T7V|1|B|C|2229
5T7V|1|B|G|2230
5T7V|1|B|C|2231
*
5T7V|1|B|G|2247
5T7V|1|B|G|2248

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L2

Chain LA

50S ribosomal protein L28