IL_5T7V_118

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_118 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.439

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|C|2324
5T7V|1|B|A|2325
5T7V|1|B|G|2326
*
5T7V|1|B|C|2344
5T7V|1|B|A|2345
5T7V|1|B|U|2346
5T7V|1|B|A|2347
5T7V|1|B|G|2348

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA