IL_5T7V_162

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCG*CGGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_162 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.378

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5T7V|1|B|C|186
5T7V|1|B|C|187
5T7V|1|B|C|188
5T7V|1|B|G|189
*
5T7V|1|B|C|213
5T7V|1|B|G|214
5T7V|1|B|G|215
5T7V|1|B|A|216
5T7V|1|B|G|217

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L34