IL_5T7V_172

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUC*GAAGUG

Length

11 nucleotides

Bulged bases

5T7V|1|B|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_172 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3322

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5T7V|1|B|C|1235
5T7V|1|B|G|1236
5T7V|1|B|U|1237
5T7V|1|B|U|1238
5T7V|1|B|C|1239
*
5T7V|1|B|G|1283
5T7V|1|B|A|1284
5T7V|1|B|A|1285
5T7V|1|B|G|1286
5T7V|1|B|U|1287
5T7V|1|B|G|1288

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15