IL_5T7V_224

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5T7V|1|B|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_224 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.1496

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5T7V|1|B|G|2764
5T7V|1|B|A|2765
5T7V|1|B|U|2766
5T7V|1|B|A|2767
5T7V|1|B|A|2768
5T7V|1|B|G|2769
*
5T7V|1|B|U|2789
5T7V|1|B|G|2790
5T7V|1|B|A|2791
5T7V|1|B|A|2792
5T7V|1|B|G|2793
5T7V|1|B|C|2794

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LL

50S ribosomal protein L6

Chain LM

50S ribosomal protein L13