IL_5TBW_006

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGUAA*UGAAGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88613.1

Basepair signature

cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|C|82
5TBW|1|1|U|83
5TBW|1|1|U|84
5TBW|1|1|A|85
5TBW|1|1|G|86
5TBW|1|1|U|87
5TBW|1|1|A|88
5TBW|1|1|A|89
*
5TBW|1|1|U|97
5TBW|1|1|G|98
5TBW|1|1|A|99
5TBW|1|1|A|100
5TBW|1|1|G|101
5TBW|1|1|C|102
5TBW|1|1|G|103

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A

Chain y

60S ribosomal protein L18-A