Motif IL_88613.1 Version IL_88613.1 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_006 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | C | 81 | U | 82 | C | 83 | A | 84 | G | 85 | U | 86 | A | 87 | G | 88 | * | U | 96 | G | 97 | A | 98 | A | 99 | G | 100 | C | 101 | G | 102 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
2 | IL_5TBW_006 | 5TBW | 0.0822 | 0 | 1 | LSU rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUCAGUAG*UGAAGCG | 1 |
CUUAGUAA*UGAAGCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCAGUA*GAAGC | 1 |
UUAGUA*GAAGC | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: