IL_5TBW_020

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

5TBW|1|1|U|534, 5TBW|1|1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|G|531
5TBW|1|1|A|532
5TBW|1|1|A|533
5TBW|1|1|U|534
5TBW|1|1|G|535
5TBW|1|1|U|536
5TBW|1|1|A|537
5TBW|1|1|G|538
*
5TBW|1|1|U|553
5TBW|1|1|A|554
5TBW|1|1|U|555
5TBW|1|1|U|556
5TBW|1|1|A|557
5TBW|1|1|U|558
5TBW|1|1|A|559
5TBW|1|1|G|560
5TBW|1|1|C|561

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20-A

Chain u

60S ribosomal protein L14-A