IL_5TBW_028

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

5TBW|1|1|A|933, 5TBW|1|1|G|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|1|G|805
5TBW|1|1|A|806
5TBW|1|1|A|807
5TBW|1|1|A|808
5TBW|1|1|G|809
*
5TBW|1|1|C|931
5TBW|1|1|U|932
5TBW|1|1|A|933
5TBW|1|1|G|934
5TBW|1|1|U|935
5TBW|1|1|A|936
5TBW|1|1|G|937
5TBW|1|1|C|938

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AK

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A