#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-103-94-86-7
1 IL_4V9F_0244V9F0.25632tHW-tHW cross-strand stack0 LSU rRNAG892C893A895C896A897C899*G765A766A767U768C769cWWtWHtWH
2 IL_8C3A_0308C3A0.19222tHW-tHW cross-strand stack (H)1 LSU rRNAC927U928G930U931A932C934*G801A802A803A804G805cWWtWH
3 IL_5TBW_0285TBW0.17012tHW-tHW cross-strand stack1 LSU rRNAC931U932G934U935A936C938*G805A806A807A808G809ntHHtWHcWW
4 IL_4WF9_0214WF90.13092tHW-tHW cross-strand stackX LSU rRNAG844A845A847U848A849C851*G719A720A721A722C723cWWntWWntWWtWH
5 IL_7A0S_0157A0S0.13272tHW-tHW cross-strand stackX LSU rRNAG812A813A815U816A817C819*G687A688A689A690C691cWWntWWtWHcWW
6 IL_5J7L_2605J7L0.00002tHW-tHW cross-strand stackDA LSU rRNAG799A800A802U803A804C806*G674A675A676A677C678cWWtWWtWHtWH
7 IL_8VTW_0178VTW0.07682tHW-tHW cross-strand stack (H)1A LSU rRNAG799A800A802U803A804C806*G674A675A676A677C678cWWtWWtWHtWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAUAGC*GAAAC4
CUAGUAGC*GAAAG2
GCAACAGC*GAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
AGAUAG*AAA4
UAGUAG*AAA2
CAACAG*AAU1

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tHW-tHW cross-strand stack (5)
  • tHW-tHW cross-strand stack (H) (2)
  • Basepair signature
    cWW-tWW-L-R-tWH-L-cWW
    Heat map statistics
    Min 0.08 | Avg 0.16 | Max 0.30
    Help

    Coloring options:

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