IL_5TBW_033

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

5TBW|1|1|G|908, 5TBW|1|1|A|920, 5TBW|1|1|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|G|907
5TBW|1|1|G|908
5TBW|1|1|G|909
*
5TBW|1|1|U|919
5TBW|1|1|A|920
5TBW|1|1|A|921
5TBW|1|1|U|922
5TBW|1|1|C|923

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L37-A

Chain j

60S ribosomal protein L2-A

Chain v

60S ribosomal protein L15-A

Chain x

60S ribosomal protein L17-A