IL_5TBW_038

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93830.3

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5TBW|1|1|G|991
5TBW|1|1|A|992
5TBW|1|1|G|993
5TBW|1|1|G|994
5TBW|1|1|U|995
5TBW|1|1|A|996
5TBW|1|1|A|997
*
5TBW|1|1|U|1052
5TBW|1|1|A|1053
5TBW|1|1|A|1054
5TBW|1|1|A|1055
5TBW|1|1|U|1056
5TBW|1|1|A|1057
5TBW|1|1|U|1058

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain o

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L10