#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-133-124-55-106-97-8
1 IL_8C3A_0418C3A0.090107x7 Sarcin-Ricin with intercalated A; G-bulge (H)1 LSU rRNAG987A988G989G990U991A992A993*U1048A1049A1050A1051U1052A1053U1054cWWcWBcSHtWHtHScWW
2 IL_5TBW_0385TBW0.000007x7 Sarcin-Ricin with intercalated A; G-bulge1 LSU rRNAG991A992G993G994U995A996A997*U1052A1053A1054A1055U1056A1057U1058cWWcwWcWBcSHtHScWW
3 IL_4WF9_0314WF90.184307x7 Sarcin-Ricin with intercalated A; G-bulgeX LSU rRNAG901A902G903G904U905A906G907*C960G961A962A963U964G965C966cWWncWBcSHtHS
4 IL_5J7L_2705J7L0.206307x7 Sarcin-Ricin with intercalated A; G-bulgeDA LSU rRNAG856G857G858G859U860A861G862*C915G916A917A918U919A920C921cWWcWWcWBcSHtWHtHS

3D structures

Complete motif including flanking bases
SequenceCounts
GAGGUAA*UAAAUAU2
GAGGUAG*CGAAUGC1
GGGGUAG*CGAAUAC1
Non-Watson-Crick part of the motif
SequenceCounts
AGGUA*AAAUA2
AGGUA*GAAUG1
GGGUA*GAAUA1

Release history

Release3.803.813.823.833.843.853.863.873.883.89
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)
  • 7x7 Sarcin-Ricin with intercalated A; G-bulge (H) (1)
  • Basepair signature
    cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.14 | Max 0.24
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