IL_5TBW_043

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

5TBW|1|1|C|1016, 5TBW|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

5TBW|1|1|G|1013
5TBW|1|1|U|1014
5TBW|1|1|U|1015
5TBW|1|1|C|1016
5TBW|1|1|C|1017
5TBW|1|1|G|1018
*
5TBW|1|1|U|1034
5TBW|1|1|G|1035
5TBW|1|1|A|1036
5TBW|1|1|C|1037

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain i

Suppressor protein STM1

Chain m

60S ribosomal protein L5

Chain s

60S ribosomal protein L11-B