Motif IL_71110.1 Version IL_71110.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_043 | 5TBW | 0.3411 | 2 | Other IL | 1 | LSU rRNA | G | 1013 | U | 1014 | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | A | 1036 | C | 1037 | cWW | ncWW | ntHW | cWW |
| 2 | IL_4KZD_004 | 4KZD | 0.0000 | 3 | Tandem non-canonical cWW pairs | R | RNA (84-MER) | G | 19 | A | 20 | A | 21 | C | 25 | * | G | 63 | A | 64 | G | 65 | C | 66 | cWW | cWW | cWW | |
| 3 | IL_4TS2_005 | 4TS2 | 0.1534 | 3 | Tandem non-canonical cWW pairs | X+Y | Spinach aptamer RNA, bimolecular construct | G | 22 | A | 23 | A | 24 | C | 28 | * | G | 74 | A | 75 | G | 76 | C | 77 | cWW | cWW | ncwW | cWW |
| 4 | IL_7L0Z_002 | 7L0Z | 0.1784 | 3 | G | RNA (69-MER) | G | 12 | A | 13 | G | 14 | C | 18 | * | G | 55 | G | 56 | G | 57 | C | 58 | cWW | cWW | ncWB | cWW | |
| 5 | IL_5J7L_033 | 5J7L | 0.3533 | 1 | Tandem non-canonical cWW pairs | AA | SSU rRNA | U | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | A | 743 | cWW | cWW | cwW | cWW |
| 6 | IL_1G1X_003 | 1G1X | 0.3843 | 1 | Tandem non-canonical cWW pairs | D+E | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 7 | IL_1G1X_006 | 1G1X | 0.3824 | 1 | Tandem non-canonical cWW pairs | I+J | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 8 | IL_4LFB_029 | 4LFB | 0.3730 | 1 | Tandem non-canonical cWW pairs | A | SSU rRNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 9 | IL_6CZR_141 | 6CZR | 0.3996 | 1 | Tandem non-canonical cWW pairs | 1a | SSU rRNA | G | 646 | A | 647 | G | 648 | G | 650 | * | U | 724 | G | 725 | G | 726 | U | 727 | cWW | ncWW | cwW | cWW |
| 10 | IL_1KUQ_003 | 1KUQ | 0.5443 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*UGGU | 5 |
| GAAGGAC*GAGC | 2 |
| GUUCCG*UGAC | 1 |
| GAGGGUC*GGGC | 1 |
| UAGAG*UGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA*GG | 6 |
| AAGGA*AG | 2 |
| UUCC*GA | 1 |
| AGGGU*GG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (8)
- Other IL (1)
- (1)
- Basepair signature
- cWW-cWW-L-R-cWW
- Heat map statistics
- Min 0.05 | Avg 0.29 | Max 0.73
Coloring options: