IL_5TBW_048

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAG*CUAUA

Length

10 nucleotides

Bulged bases

5TBW|1|1|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5TBW|1|1|U|1167
5TBW|1|1|U|1168
5TBW|1|1|A|1169
5TBW|1|1|A|1170
5TBW|1|1|G|1171
*
5TBW|1|1|C|1328
5TBW|1|1|U|1329
5TBW|1|1|A|1330
5TBW|1|1|U|1331
5TBW|1|1|A|1332

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AF

60S ribosomal protein L32

Chain AG

60S ribosomal protein L33-A

Chain o

60S ribosomal protein L7-A

Chain y

60S ribosomal protein L18-A