IL_5TBW_051

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCAUCAG*CUCAAG

Length

14 nucleotides

Bulged bases

5TBW|1|1|U|1191, 5TBW|1|1|C|1192, 5TBW|1|1|C|1316, 5TBW|1|1|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27086.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|C|1187
5TBW|1|1|U|1188
5TBW|1|1|C|1189
5TBW|1|1|A|1190
5TBW|1|1|U|1191
5TBW|1|1|C|1192
5TBW|1|1|A|1193
5TBW|1|1|G|1194
*
5TBW|1|1|C|1314
5TBW|1|1|U|1315
5TBW|1|1|C|1316
5TBW|1|1|A|1317
5TBW|1|1|A|1318
5TBW|1|1|G|1319

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20-A

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A

Chain u

60S ribosomal protein L14-A

Chain w

60S ribosomal protein L16-A